Those of you interested in filling in the floodplain will find this interesting. This is part of the *draft* Pacific Coast Salmon Plan for Essential Fish Habitat from the National Marine Fisheries Service. This is just a draft, but may provide a clue to what is coming under federal regulations. There's lots more in here.
Under this plan, the Chehalis Basin is definitely included in salmon recovery regulations. See it all at this www site
Public Law 104-267, the Sustainable Fisheries Act of 1996, amended the MSFCMA to establish new requirements for Essential Fish Habitat (EFH) descriptions in federal Fishery Management Plans (FMPs) and to require federal agencies to consult with NMFS on activities that may adversely affect EFH. The MSFCMA requires all Fishery Management Councils to amend their FMPs by October 1998 to describe and identify EFH for each managed fishery. In accordance with the MSFCMA, NMFS published an interim final rule in the Federal Register on December 19, 1997 (62 FR 66531) providing guidelines to assist the Councils in description and identification of EFH in FMPs. NMFS also is required to provide each Council with recommendations on EFH for each fishery under the Council's authority.
NMFS developed this proposed EFH recommendation for the Pacific Coast Salmon Plan through a process that has involved input from the Pacific Fishery Management Council (Council), its advisory bodies, and the fishing industry at the Council's public meetings in September 1997, November 1997, and March 1998. NMFS also formed a technical team consisting of state, tribal, university, federal and industry individuals to provide technical input and advice on the development of the NMFS recommendations.
After consideration of public comments submitted by May 8, 1998, NMFS will finalize these recommendations for submission to the Pacific Fishery Management Council at its June 22-26, 1998 public meeting in Seattle. The Council will adopt proposed amendments to the salmon FMP for EFH and other issues at this meeting, and the Council's proposed amendment will then be made available for public comment. At its September 14-18, 1998 meeting in San Francisco, CA, the Council will approve the final amendment to the salmon FMP for submission to the Secretary of Commerce.
After the amendments to the Fishery Management Plans are approved by the Secretary of Commerce, the consultation requirements of the MSFCMA will be in effect.
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River valleys were once marshy and well vegetated, filled with mazes of floodplain sloughs, beaver ponds, marshes and wetlands. Salmon evolved within these systems.
Juvenile salmon, especially coho, can spend large portions of their fresh water residence rearing and over-wintering in floodplain environments and riverine wetlands. Salmon survival and growth are often better in floodplain channels, oxbow lakes, and other river-adjacent waters than in mainstem systems (NRC 1996). Additionally wetlands provide other ecosystem functions important to salmonids such as regulation of stream flow, stormwater storage and filtration, and often provide key habitat for beavers (that in turn may provide instream habitat benefits to coho from their active and continual placement of wood in streams) (OCSRI 1997). Floodplains (even those that are not wetlands) also help store water, filter nutrients, and cycle nutrients into the aquatic ecosystem.
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Wetlands throughout the region have been converted through diking, draining and filling to create agricultural fields, livestock pasture, areas for ports, cities, and industrial lands. Wetlands were further altered to improve navigation along rivers. These changes have transformed the complex river valley habitat, with many backwater areas into a simplified drainage systems most of whose flow is confined to the mainstem (NRC 1996). The losses have been extensive.
California, has lost 91% of the wetlands present before Euro-American colonization (about 454,000 acres remain), Oregon has lost 38% of its historical wetlands (1.39 million acres remain), Washington has lost 31% (about 938,000 acres remain), and Idaho about 56% of its historical wetlands (about 385,000 acres remain) (NRC 1996).
Due to this alteration, these areas became less capable of absorbing flood waters, and further alteration occurred as flood control structures were built to handle the increased water flows.
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Flood control projects involve the construction of water storage dams, dredging to increase channel capacity, or the building of dikes and levees which prevent rivers from over-topping their banks. These projects have been extensive through the region. In the Pacific Northwest, an estimated 3000 km of dikes, 5000 km of dike protection, and 5,800 km of channel modifications (dredging) for flood control had been completed by the early 1970s. In the lower-Columbia River 90,000 acres of floodplains have been lost by flood control diking (Kaczynksi and Palmisano 1993).
In addition to the direct loss of the overwintering habitat, nutrients, and lower flows that wetlands and floodplains provide, the construction of dikes, levees (as well as roads etc. in the floodplain) have other affects on salmon habitat. These structures prevent the connections between the rivers and floodplain, depriving the rivers of supplies of large woody debris (which provide important cover and help shape stream channels and capture spawning gravels), as well as the input of fine organic matter and dissolved nutrients which support the food web for salmon (NRC 1996).
These structures also deprive the river of a place to deposit sediment, so more sediment moves downstream, causing stream channel aggradation, estuary filling, as well as frequent scour and fill which damages habitat the spawning redds.
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While the magnitude of these effects are not known with any certainty, an annual loss of between 220,000 and 560,000 juvenile coho is estimated to result from the loss of about 54% of the riverine slough and wetland habitat that once was available for coho salmon rearing in Washington's Skagit Valley floodplain. The complete loss (by 1977) of major wetlands along Seattle's heavily urbanized Thornton Creek, a tributary of Lake Washington which used to support coho helps explain the fact that there have been no coho returns since 1979 despite continued placement of young hatchery fish in the stream (NRC 1996).
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Alteration of Wetlands and Floodplains In addition to applicable measures related to siting of docks and marinas, the maintenance of dikes and drainage ditches (in the estuarine alteration section), the following general measures apply.
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Though the total amount of urban area may be small, cities and towns are often located in important habitat areas for salmon, areas with low gradients, that often contain wetlands, flood plains or that are along major rivers, tributary junctions and estuaries.
Urbanization has typically resulted in extensive losses of estuaries, wetlands, and riparian habitats.
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Additionally, activities associated with urbanization (e.g. building construction, utility installation, road and bridge building, storm water discharge) alter the land surface, soil, vegetation, and hydrology significantly and can affect salmon EFH directly and indirectly through habitat loss and modification. Aquatic habitats in urban and urbanizing areas are more highly altered than in any other land-use type in the Pacific Northwest and the proportion of the streams within the urban areas that are degraded is greater than those subject to other land uses (Gregory and Bisson 1997).
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Construction in and adjacent to waterways often involves dredging and/or filling activities, bank stabilization (see other sections), removal of shoreline vegetation, waterway crossings for pipelines and conduits, and the construction of docks and piers which can destroy salmon habitat directly, or cause turbidity and sedimentation, raise water temperature, shade-out vegetation, alter hydrology and flow characteristics, and re-suspend pollutants, all of which can affect both salmon and their prey. Explosives are sometimes also used in essential salmon habitat for the construction of dams and bridges with potentially acute effects on salmon and their prey. The on-going cumulative effects of waterway projects may include the reduction in total vegetated area, the loss of riparian vegetation (resulting in greater stream heating in the summer and the lack of recruitment of large woody debris), the constriction or channelization of stream channels (e.g. with concrete or riprap) with flow and hydrologic impacts, and impairment of water quality through run-off of sediment, fertilizer and pesticides washed from yards and oils and metals from roads and parking lots, or of nutrients from failing septic systems.
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Many projects along or in waterways are of sufficient scope to cause significant long-term or permanent adverse affects on aquatic habitat; however, most waterway projects and other projects associated with the growth, urbanization and construction within the region are small-scale projects that often receive minimal or no environmental review as they cause independently minor losses or temporary disruptions. The significance of small-scale projects lies in the cumulative and synergistic effects resulting from a large number of these activities occurring in a single watershed. For example, in the watersheds of the Puget Sound region between 1990 and 1996 there were 2678 permits (Hydraulic Project Approval) granted for work that involved a combination of bank protection (e.g. diking, riprap, flood control), bulkhead construction and repair, docks, piers, wharfs, and breakwaters, and storm drain and sewer outfalls (PSWQAT 1997).
Back to top or back to Fish home page or back to Whats New Construction activities that are removed from waterways can also have detrimental effects on salmon habitat through the run-off of large quantities of sediment, as well as the nutrients, heavy metals, and pesticides that are adsorbed to the sediment. Run-off of petroleum products and oils from roads and parking lots and sediment, nutrients, and chemicals from yards as well as discharges from municipal sewage treatment plants and industrial facilities are also associated with urbanization. Withdrawal of water for municipal use, lawns and gardens, especially during the summer and early fall, can contribute to water temperature and flow problems for salmon.
Through the increased amount of impervious surfaces, urbanized areas also alter the rate and intensity of run-off into streams and waterways (see below).
The magnitude of these affects can be much greater than in other types of land uses, despite the smaller geographic extent. For example, in areas under going urbanization, rates of erosion are often greater rates of erosion than agricultural or forest lands due to the extensive excavation involved and the time the soils remain exposed.
Back to top or back to Fish home page or back to Whats New Erosion rates from natural areas such as undisturbed forested lands are typically less than one ton/acre/year, while erosion from construction sites ranges from 7.2 to over 1000 tons/acre/year (EPA 1993). In studies done in urbanizing areas in Maryland, sediment loads from lands under going urbanization were found to be up to 50 times more than those in rural areas, while annual sediment yields from urban development to streams were up to 200 tons/acre or more, far more than from agricultural erosion in the same area (about 5 tons/acre); stream sedimentation blanketed benthic faunas and altered fish species composition. A major problem was the period of time that disturbed surfaces lay exposed-- more than a year at 25% of the sites.
A land-use study in Virginia, comparing urban, agricultural, and forested areas in terms of their effects on state water resources concluded that forestry practices contributed little, agriculture was an important source, and urban development contributed the most sediment (as well as other pollutants). A 14 year study of sediment control practices in Washington, DC, where yields of suspended sediment from urban land were up to six times more than yields from cultivated land and up to over 120 times those from forested and grassed lands, control measures, including shorter exposure times, installation of settling basins, temporary vegetation during construction, and earlier final vegetation installations, decreased suspended sediment yields by 60% to 80% (Waters 1995).
Back to top or back to Fish home page or back to Whats New Similarly, effects on run-off rates due to the amount of impervious surface can be much greater than in any other type of land use. As development proceeds, the percentage of land covered by hard surfaces increases, reducing the area available for water infiltration and increasing surface runoff. Buildings, rooftops, sidewalks, parking lots, roads, gutters, storm drains, and drainage ditches in combination quickly divert rainwater and snow melt to receiving streams, resulting in an increased volume of runoff from each storm, increased peak discharges, decreased discharge time for runoff to reach the stream, increased frequency and severity of flooding (EPA 1993).
An Illinois study on flood hazards and mitigation shows how the extent of urbanization alters the amount of runoff. Under conditions of natural ground cover there is 0% impervious surfaces and about 5 percent of the rainwater runs off the land. Rural development areas with 10-20% impervious surfaces have a surface water run-off of about 23%. Single family homes, with 35-50 percent impervious surfaces, results in a 35% surface water run-off. In conditions of full-urbanization, where there is between 75-100% impervious surfaces, 61% of the rainwater runs off the land (Metro 1997).
In studies in King County, Washington, that modeled hydrologic conditions (using 40 years of actual precipitation records) for forested watersheds versus a fully urbanized watershed (with 40% impervious surface), predicted flooding events were quite different. In forested watersheds seven 5-year flood events were predicted, in urban watersheds, about 38 flood events were predicted. The interval between flood events in forested watersheds were predicted to range between 4 and 14 years, while in the urbanized watershed there was only one year without a flood event of this magnitude (Palmisano et al. 1993).
In addition to increasing flooding events, the alteration in quantity and timing of run-off accelerates bank erosion and the scouring of the streambed, as well as the downstream transport of wood, resulting in simplified stream channels and greater instability, all factors harmful to salmon (Spence et al. 1996). The lack of infiltration also results in lower stream flows during the summer by reducing the interception, storage, and release of ground water into streams. This affects habitat availability and salmonid production, particularly for those species that have extended freshwater rearing requirements (e.g. coho). The higher peak flows, the lower low flows, as well as the reduction in stream complexity (e.g. fewer pools, woody debris, and hiding places) that results from development, also can change species compositions in streams, favoring cutthroat trout populations over the natural coho populations (WADOE 1997).
Generally, it has been found that instream functions and value begin to seriously deteriorate when the levels of impervious surfaces exceed 10% of a subbasin (WDFW 1997).
Back to top or back to Fish home page or back to Whats New The amount of impervious surfaces also can influence stream temperatures. The air and ground temperatures in impervious areas can be 10 to 12 degrees warmer than in agricultural and forested areas. In addition, the trees that could be providing shade to offset the effects of solar radiation are often missing in urban areas. A study in Maryland of headwater streams, found that urban streams had mean temperatures that were consistently warmer than a forested reference stream, and that the increase in temperature appeared to be a direct function of the increase in amount of impervious surface (Metro 1997).
Back to top or back to Fish home page or back to Whats New Existing urban and industrial sites, highways, and other permanent structures will prevent restoration of riparian zones in heavily developed areas. In these areas, generally along major river systems, buffers will not be continuous and riparian areas will remain fragmented. Habitat improvement plans will need to identify locations of healthy riparian zones and opportunities for re-establishing corridors of riparian vegetation between them, so that nodes of good quality habitat can be maintained and managed in ways with protection of salmon habitat (Sedell et al. 1997).
Back to top or back to Fish home page or back to Whats New Conservation and Enhancement Measures -- Construction/Urbanization In addition to the applicable measures under the Dredging, Estuarine (e.g. marina and dock construction), and Bank Stabilization sections, the following measures should be applied.
Back to top or back to Fish home page or back to Whats New Dams built to provide power, water storage and flood control have significantly contributed to the decline of salmonids in the region. Dams have impeded or blocked passage by adult and juvenile salmonids, and have caused gross changes in habitat conditions of rivers and streams (Spence et al. 1996). The multiple direct and indirect impacts of dams have been widely studied and discussed. Impacts include impairments to fish passage (including blockages, diversions), detrimental alterations to water temperature, water quality, water quantity, and flow patterns, the interruption of nutrient, large woody debris, and sediment transport which effect riverine, wetland, riparian, and estuarine systems, and increased competition with non- native species, as well as increased predation and disease. Specific biologic opinions and recovery plans exist due the presence of listed species in dam affected watersheds of the Columbia and Snake River Basins and in the Sacramento River basin and Sacramento-San Joaquin Delta .
Back to top or back to Fish home page or back to Whats New The construction of dams without fish passage facilities has blocked salmon from thousands of miles of mainstem and tributary stream habitat in the Columbia River Basin, Sacramento-San Joaquin system, and other streams throughout the western United States (PFMC 1988) In the Columbia River basin, an estimated 55% of the total area and 33% of the total stream miles (over 3,000 miles) are no longer accessible to anadromous salmonids because of the dams. Within the Washington portion of the Columbia River Basin, only 3791 stream miles of the original 4550 remain accessible (WDFW 1997) Estimates place remaining spawning grounds in the Sacramento-San Joaquin system at 900 miles of the original 6,000 miles of available spawning habitat (PFMC 1988).
Dependence upon technology to provide passage around dams has not always been successful.
Where upstream fish passage facilities have been provided migration delays and increased mortality of adults persist. Fishway design and flow are very important to attract and guide adult salmon into passage facilities. Poorly designed fishways can inhibit movement of adults upstream, causing migration delays, increased pre-spawning mortality, and reduced reproductive success of the fish that eventually reach their spawning grounds (PFMC 1988). For example, Sacramento River winter run Chinook adults delayed during their migration by Red Bluff Diversion Dam try to spawn below the dam where water temperatures are usually too high for successful spawning and egg incubation (NMFS 1997a).
Back to top or back to Fish home page or back to Whats New Dams are also a barrier to downstream passage of juveniles, and reservoirs and water diversions (see section on water diversions) reduce water velocities and change current patterns, resulting in increased migration times, exposure to less favorable habitat conditions, and increased exposure to predation.
At dams, injury and mortality to juveniles occurs as a result of passage through turbines, sluiceway, juvenile bypass systems, and adult fish ladders. Impact with turbine blades, rough surfaces, or solid objects can cause death or injury. Changes in pressure within turbines or over spillways also can result in death or injury. Juveniles, frequently stunned and disoriented as they are expelled at the base of the dam, are particularly vulnerable to predation (PFMC 1988) Dams also result in changes in concentrations of dissolved oxygen and nitrogen.
Back to top or back to Fish home page or back to Whats New Below hydroelectric facilities, nitrogen supersaturation may also negatively affect migrating salmon, by causing gas-bubble disease. Mortalities from gas bubble disease increase in years of high flow and high spill.
The severity and outcome of gas bubble disease depends on the level of dissolved gas supersaturation; duration of exposure to supersaturated water; water temperature (warmer water can hold less gas, and can therefore become supersaturated at lower pressures); health and condition of the fish; and swimming depth of fish (PFMC 1988). Above the dams, slow-moving water has lower dissolved oxygen levels than faster, turbulent waters, a factor that may stress fish (Spence 1996).
Back to top or back to Fish home page or back to Whats New Losses of juvenile fish due to passage mortalities are estimated at 11 to 15 percent per dam for those passing through turbines, compared to one to two percent or more for those going over spillways or through bypasses. This mortality is cumulative along the course of a river on which a number of dams are built. On the Columbia River, where some stocks have as many as eight or nine dams to pass, cumulative juvenile passage mortality can routinely exceed 75 percent. In low flow years, this loss can approach 100 percent; for example, in 1977, loss of Chinook salmon between Lower Granite and The Dalles dams was estimated at 98 percent (PFMC 1988) Attempts to bypass dams by barging and trucking fish may stress fish and increase transmission of parasites and disease, reducing their chance for survival (Spence et al. 1996) At California’s Red Bluff Diversion Dam, of those juveniles that must pass the dam, mortalities may range from 16-55%, primarily resulting from increased predation, rather than physical injury (NMFS 1997a).
Back to top or back to Fish home page or back to Whats New Hydrologic effects of dams include water-level fluctuations, altered seasonal and daily flow regimes, reduced water velocities and reduced discharge volume. These altered flow regimes can affect migratory behavior of juvenile salmonids. Water-level fluctuations associated with hydropower peak operations may reduce habitat availability, inhibit the establishment of aquatic macrophytes that provide cover for fish, and in some cases strand fish or allow desiccation of spawning redds. Drawdowns reduce available habitat area and concentrate organisms, potentially increasing predation and transmission of disease (Spence 1996). Drawdown in the fall for flood control produces high flows during spawning which allows fish to spawn in areas which may not have water during the winter and spring, resulting in loss of the redds.
Impoundments may also change the thermal regimes of streams causing impacts to salmon.
Temperatures may increase in shallow reservoirs. Below deeper reservoirs that thermally stratify, summer temperatures may be reduced, but fall temperatures tend to increase as heated water stored during the summer is released. These changes in water temperatures affect development and smoltification of salmonids, decreasing survival. Water temperatures also can affect adult migration (Spence 1996) For example, In California's San Joaquin River, adult chinook migration ceased at temperatures above 70E F and then resumed when temperatures decreased to 65E F (NMFS 1997a). Water temperature changes also influence the success of predators and competitors and the virulence of disease organisms. Additionally, in winter, drawdown of impoundments may facilitate freezing, which diminishes light penetration and photosynthesis, potentially causing fish kills through anoxia (Spence 1996).
Dam impoundments alter natural sediment and large woody debris transport processes. Water storage at dams may prevent the high flows that are needed to scour fine sediments from spawning substrate and move wood and other materials downstream. Behind dams, suspended sediments settle to the bottoms of reservoirs, depriving downstream reaches of needed sediment inputs, leading to the loss of high quality spawning gravels (as substrate becomes dominated by cobble unsuitable for spawning) as well as to changes in channel morphology (Spence et al. 1996).
Back to top or back to Fish home page or back to Whats New Dams have also affected the health and extent of downstream estuaries.
Reservoir storage in the upper Columbia and Snake Rivers has altered both the seasonal pattern and the characteristics of extremes of freshwater entering the estuary. Since large-scale regulation of the flow cycle began about 1969, the variation of monthly mean flow has been reduced. Flow damping has resulted in a reduction in average sediment supply to the estuary. Between 1870 and 1990, due in part to these sediment input reductions the estuary of the Columbia River lost 20,000 acres of tidal swamps, 10,000 acres of tidal marshes, and 3,000 acres of tidal flats. This has resulted in an estimated 80% reduction in emergent vegetation production and a 15% decline in benthic algal production (NRC 1996). (Also see water diversion section).
Except for times of major floods, residence time of water in the estuary has increased with decreasing salinity. The estuary has also been converted into a less-energetic microdetritus-based ecosystem with higher organic sedimentation rates. Detritus and nutrient residence has increased; vertical mixing has decreased, likely increasing primary productivity in the water column, and enhancing conditions for detritivorous epibenthic and pelagic copepods. The impacts of these changes have not been evaluated as yet, though there are concerns about possible effects on fisheries and other resources which depend on a highly co-evolved and biologically diverse estuarine environment (NRC 1996).
Reservoir storage in the Columbia River has also altered the hydrograph by diverting summer flows to winter, which altered coastal sea-surface salinities from California to Alaska. Coastal ocean and estuarine dynamics have changed at various locations along 2,000 km of North Pacific shoreline. The effects of those alterations on trophic dynamic, loss to predators, and migration success are not known (NRC 1996).
Back to top or back to Fish home page or back to Whats New Dam Construction/Operation
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Environmental Review
Construction away from waterways
Erosion rates
Water runoff rates and floods
Stream temperature
Riparian zones
Conservation and Enhancement Measures
[These conservation measures for Construction/Urbanization were adapted from suggestions by Metro (1997), ODFW (1989), EPA (1993)] III.D.6.
Dam Construction/Operation
Dams without fish passages
Downstream passage
Nitrogen supersaturation
Estimated mortalities
Hydrologic effects of dams
Dams affect on downstream esturaies
Conservation and Enhancement Measures --
* Specific flow objectives have been developed for the Columbia and Snake River and Sacramento Bay/Delta river systems and other systems with federally operated facilities where there are species listed under the Endangered Species Act, through FERC orders, through specific legislative acts (e.g. the Central Valley Water Improvement Act, the Delta Accord), water quality standards, and through legal settlement agreements.
[These conservation measures for Dam Construction/Operation were adapted from recommendations in Spence et al. (1996) and NMFS (1997a)]
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